Relationship of Icelandic cattle with Northern and Western European cattle breeds,admixture and population structure

ABSTRACT

Icelandic cattle is believed to have been brought from Norway during the settlement of Iceland around AD 870-930. Previous research on genetic relationships has indicated that Icelandic cattle is most related to northern Nordic indigenous breeds. Using single nucleotide polymorphism genotype data from Icelandic cattle and 29 Northern and Western European cattle breeds, we studied relationships and admixture among these breeds, and assessed population structure in Icelandic cattle. Population structure analysis through principal component analysis, estimation of ancestry, and analysis of patterns of population splitting and mixing revealed that Icelandic cattle are most related to three Finncattle breeds (Eastern, Northern and Western Finncattle), and Swedish Mountain cattle. Icelandic cattle has very low levels of admixture. We observed very limited population structure in Icelandic cattle. The observed structure was due to variable sire contributions. Over 1000 years of almost complete isolation has made Icelandic cattle highly genetically distinct from other cattle breeds.     

基于高通量测序技术分析石蝉草内生细菌多样性

以石蝉草根、茎、叶为材料,采用Illumina Mi Seq高通量测序技术研究石蝉草内生细菌多样性。结果表明,根、茎、叶样品共测得167个OTUs,归属于11个门,分别为变形菌门、Ignavibacteriae、芽单胞菌门、梭杆菌门、厚壁菌门、异常球菌-栖热菌门、绿弯菌门、拟杆菌门、放线菌门和酸杆菌门,各样品的菌群组成和多样性虽有差异,但以变形菌门为优势菌群,约占62.48%~93.24%。在各样品菌群丰度最高的10个OTUs中,叶部优势群落芽孢杆菌属、根部特有群落粘球菌目与石蝉草中具有抗炎、抗肿瘤活性的物质存在潜在相关性。     

重金属Cd、Pb复合污染对植物生理生化和细胞结构影响的研究进展

我国受重金属污染的土地面积广大,因采矿等造成的环境和土壤重金属污染问题日趋严重。因金属矿床形成特点及开采方式单一等原因,造成Cd、Pb居于重金属复合污染前列。通过总结单一Cd、Pb污染对植物生理生化特征的影响以及Cd、Pb复合污染对植物生理生化及细胞结构的影响等研究进展,明晰土壤重金属Cd、Pb复合污染对植物影响和损害的研究热点,进而探明植物重金属胁迫的生理响应机制。     

抚育间伐对燕山北部山区山杨林物种多样性的影响

为了了解抚育间伐对燕山北部山区山杨林物种多样性的影响,对山杨林抚育间伐前后的物种多样性进行了调查和分析,结果表明:抚育后林地草本植物的物种多样性高于未抚育林地,抚育间伐林地草本植物的Patrick指数、Margarlef指数、Simpson指数和Shannon-Wiener指数分别为35.0、6.13、0.89和2.76,未抚育样地分别为29.0、4.90、0.32和1.91;抚育林地灌木的Patrick指数、Margarlef指数、Simpson指数和Shannon-Wiener指数分别为9.0、1.41、0.43和0.98,未抚育林地则分别为8.0、1.48、0.68和1.51,除Patrick指数外,抚育林地的其他多样性指数都低于未抚育林地;抚育间伐使乔木层优势种的优势更为明显。由此得出结论,抚育间伐对山杨林的物种多样性有明显影响,但草本、灌木与乔木对抚育间伐的响应有所不同。     

Analysis on Genetic Diversity and Phyletic Evolution of mtDNA Cytb Gene in Zhongdian Yak

In order to investigate the genetic diversity and the origin of evolutionary relationship of Zhongdian yak,we analyzed the complete sequence of 15 individuals Cytb gene,its sequence polymorphism was analyzed,and the phylogenetic tree was constructed.The results showed that the length of the nucleotide sequence were 1 140 bp,with nucleotide frequencies of 26.3%,31.8%,13.1% and 28.8% for T,A,G and C,respectively.Three haplotypes were identified of 15 individuals,with 3 polymorphic sites,including two conversions,one transversion,haplotype diversity was 0.2571 and nucleotide diversity was 0.00035.Phylogenetic analysis suggested that Zhongdian yak and Bos mutusc clustered firstly,then gathered with Bison bison,which indicated that there were high genetic similarity and closer genetic relationship,genetic similarity with other cattle genus was relatively low.Combining with the proof of molecular biology and paleontology,the result supported the point that Bos grunniens and Bos mutus were classified as an alone genus in Bovinae.     

亮斑扁角水虻形态观察及诱产卵菌的筛选

【目的】 研究引进亮斑扁角水虻在室内饲喂条件下的生活史、成虫种群雌雄比例变化规律,对其卵表及幼虫肠道中诱成虫产卵菌进行筛选和鉴定,为亮斑扁角水虻在本地区的规模养殖和综合利用提供理论依据。【方法】 引进亮斑扁角水虻,在室内光照条件下饲喂4代,用直接观察法记录亮斑扁角水虻在不同饲喂条件下的生活史和生活习性,显微拍照记录水虻各龄期的形态特征;用稀释涂布平板及平板划线的方法,对亮斑扁角水虻卵携带菌及其幼虫肠道菌进行分离纯化,筛选可诱导产卵的菌株,并鉴定。【结果】 与内地相比,亮斑扁角水虻在新疆饲养周期稍有延长,但其发育完好,能够在本地区进行世代饲养;观察并记录了其卵、幼虫、蛹、成虫及其其生殖器形态;筛选到对亮斑扁角水虻雌性成虫有诱导产卵效果的两株菌e1、Y3,其发酵液处理组平均产卵量分别为对照组的6.26和7.40倍,两株菌皆为革兰氏阳性菌,16S RNA测序初步鉴定e1为暹罗芽孢秆菌,Y3为节杆菌属,且Y3为1种潜在的新菌。【结论】 引进亮斑扁角水虻在新疆能够周年循环养殖,具有规模生产及综合开发利用潜力。     

新疆春小麦育成品种遗传演变分析

【目的】研究新疆春小麦育成品种遗传演变规律,提高小麦资源的利用效率,为新疆春小麦品种选育和改良提供参考依据。【方法】以新疆春小麦育成品种为材料,对其主要性状进行综合评价分析,以春小麦90K芯片开展新疆春小麦育成种亲缘关系分析。【结果】新疆春小麦育成种遗传多样性丰富,平均遗传多样性指数2.005,变幅为1.902~2.181。相关性分析结果表明,蛋白质含量、湿面筋含量、穗粒数与育种年代呈极显著正相关。新疆春小麦品种选育主要是通过常规杂交育种、杂交辐射诱变育种、引种3种方式。利用小麦90K芯片将新疆春小麦育成种划分为3个类群,显示了各品种之间的亲缘关系。【结论】新疆春小麦育种遗传基础薄弱、遗传多样性逐渐散失,新疆小麦育种应加强资源收集与利用,扩大育种亲本选择,提高品种变异的丰度和广度,以多抗、高产稳产、优质高效的聚合育种,加快新品种选育进程,提高育种效率。     

皖北石灰岩山地不同植被恢复模式对植物群落物种组成及多样性的影响

通过研究皖北石灰岩山地生态系统的植被群落,分析不同植被恢复群落的组成、结构、多样性和生活型组成,进而阐明石灰岩山地生态系统植被恢复模式对群落结构特征以及植物物种多样性的影响。结果表明:研究区有54种植物,隶属26科54属。侧柏(Platycladus orientalis)+构树(Broussonetia papyrifera)人工混交林有植物种类16科26种,分别占总数的61.5%和48.1%。酸枣(Ziziphus jujuba var.spinosa)+牡荆(Vitex negundo var.cannabifolia)灌丛和荩草(Arthraxon hispidus)+牡荆草灌丛植物种类分别为32和33种,分别占调查总物种数的59.3%和61.1%。不同植被恢复群落生活型也有差异。侧柏+构树人工混交林群落高位芽植物占优势,而酸枣+牡荆灌丛和荩草+牡荆草灌丛则以地面芽植物所占比例较大。分析表明,多样性指数、均匀度指数和优势度指数均表现为侧柏+构树混交林>酸枣+牡荆灌丛>荩草+牡荆草灌丛,但物种丰富度表现为荩草+牡荆草灌丛>酸枣+牡荆灌丛>侧柏+构树混交林。Sörensen较高值出现在酸枣+牡荆灌丛与侧柏+构树混交林和荩草+牡荆草灌丛之间,侧柏+构树混交林与荩草+牡荆草灌丛Sörensen多样性值较低。研究结果表明,石灰岩山地独特的地貌特征和人工植被恢复对植物群落组成、多样性及其生活型组成产生重要影响。     

基于nSSR和cpDNA序列的城步峒茶群体遗传多样性和结构研究

采用简单重复序列标记(nSSR)与叶绿体DNA序列(cpDNA)分析技术,对城步峒茶群体进行了遗传多样性、遗传结构和遗传分化等研究。结果表明,15对nSSR引物在参试81份资源中共获得142个等位位点,平均每对引物9.47个,城步峒茶群体的观测杂合度(Ho)、期望杂合度(He)和Nei期望杂合度(Nei)分别为0.49、0.62和0.62,具有较高的遗传多样性。Structure分析将79份峒茶资源分成3个类群,但各类群的遗传背景较为复杂,没有明显的群体结构。F检验表明,城步峒茶群体的近交系数F_IS为正值(F_IS=0.177 5),群体间的遗传分化系数F_ST较小(F_ST=0.034 5),分化程度较低,基因流Nm较高(Nm=7.01)。3对cpDNA引物分别获得了473 bp(rbcL)、704 bp(matK)和320 bp(psbH-trnA)的片段序列,变异位点占总位点的比例分别为0.42%、0.71%和1.25%。将3个序列依次拼接,共产生了9个单倍型,单倍型数由多到少的居群依次为TXZ(6)、DZC(4)、DPS(4)、TYS(3)、HJZ(2),群体的单倍型多样性(Hd)和核苷酸多样性(π)分别为0.732和0.001 39。9个单倍型中,单倍型H1和H5处于进化网络图的中心节点上,并且包含资源数量最多,属于比较原始的单倍型。同时,nSSR和cpDNA的AMOVA分析结果基本一致,居群内的变异百分比分别达到96.69%和80.54%,城步峒茶的遗传变异主要存在于居群内。